Scaffold

Scaffold, if told in a short form,  compresses itself to a great bundle of serviceable tools, proposing multiple solutions to people who are knowledgable in spheres of data researching, resource departments/core facilities, or generally sharing possessed information with either your colleagues or customers. It organizes all of the data into chosen analytics, comparisons, quantitations, and some other at-hand graphical instruments. From the side of the customer (but also workers, if needed) it has reports, GO annotations, and pathway analysis, all helping understand the way your team is heading, as well as gathering all the information in one place for you to work with later.

The good about this program is its accessibility not only on Windows, but also on other operating systems, meaning that (if needed) it can be used across the working space, placed on different devices, and still sync and perform just fine. The program is free, though it may require an MS Fragger license in some cases, but academic labs may use it freely, just as it is. Creators of Scaffold also post some basic get-into videos for you to follow, so that's also a thing too.

Features:

Scaffold is an ultimate multi-layer data management software, highly suitable for core facilities, researchers, data engine workers and others

• Many interconnected tools, both analytics-like and just data collection, DIA proteomics, review/report sharing, and more
• A great collection of additional documentation, videos, patch notes, and familiar software synergies all contribute to the better acknowledgment of the program use
• Biology-related segments like protein presence/percentage, selected chemicals comparisons, and others
• Detailed settings section, giving many customizability options for you to change (mainly software/connection-related)
• Many importing/exporting options, publishing ones, too
• Accurate calculations are all done by built-in machines that operate fast and seamlessly 
• Bulk operations, advanced preferences, peptide/annotation thresholds, and countless other features and options

In summary, Scaffols is a must for all biology-related workers, especially those who also enjoy operating high-quality software made for their job. The program offers many helpful instruments to see and play around with, and this, for sure, will make your work, cooperation, and efficiency levels reach new heights, considering all the aforementioned reasons.